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replace --TMP_DIR by --tmp-dir in BaseRecalibrator to close #704#705

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alneberg merged 2 commits intoSciLifeLab:devfrom
maxulysse:BaseRecalibrator
Dec 17, 2018
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replace --TMP_DIR by --tmp-dir in BaseRecalibrator to close #704#705
alneberg merged 2 commits intoSciLifeLab:devfrom
maxulysse:BaseRecalibrator

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@maxulysse maxulysse commented Dec 17, 2018 •
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PR checklist

  • PR is made against dev branch
  • This comment contains a description of changes (with reason)
  • Ensure the test suite passes (./scripts/test.sh -p docker -t ALL).
  • CHANGELOG.md is updated

alneberg
alneberg approved these changes Dec 17, 2018
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Excellent!

@alneberg alneberg merged commit ac53e63 into SciLifeLab:dev Dec 17, 2018
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maxulysse commented Dec 17, 2018

cf https://software.broadinstitute.org/gatk/documentation/tooldocs/4.0.9.0/org_broadinstitute_hellbender_tools_walkers_bqsr_BaseRecalibrator.php#--tmp-dir

@maxulysse maxulysse deleted the BaseRecalibrator branch December 17, 2018 14:05
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